STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
e4f1E4F transcription factor 1. (770 aa)    
Predicted Functional Partners:
anks3
Ankyrin repeat and sterile alpha motif domain containing 3.
   
  0.810
wdr24
WD repeat domain 24.
   
 
  0.803
zgpat
Zinc finger CCCH-type and G-patch domain containing.
   
   0.769
ENSPRNP00000027936
annotation not available
    
  0.657
ENSPRNP00000027937
annotation not available
    
  0.657
ENSPRNP00000010757
BRCA1 associated RING domain 1.
    
  0.646
ENSPRNP00000051160
Leucine-rich repeats and guanylate kinase domain containing.
    
  0.620
YTHDC2
YTH domain containing 2.
    
  0.613
arid4a
AT-rich interaction domain 4A.
    
 0.610
sufu
SUFU negative regulator of hedgehog signaling.
    
  0.607
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.