STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
polrmtRNA polymerase mitochondrial. (1316 aa)    
Predicted Functional Partners:
tfb2m
Transcription factor B2, mitochondrial.
   
 0.996
tfb1m
Transcription factor B1, mitochondrial.
   
 0.992
tfam
Transcription factor A, mitochondrial.
    
 0.991
srfbp1
Serum response factor binding protein 1.
   
 0.990
dimt1
DIMT1 rRNA methyltransferase and ribosome maturation factor.
   
 0.972
tefm
Transcription elongation factor, mitochondrial.
    
 
 0.962
polr1b
RNA polymerase I subunit B.
   
  
 0.900
LOC114437618
Aconitate hydratase, mitochondrial-like.
    
 0.868
ACO2
Aconitate hydratase, mitochondrial-like.
    
 0.868
polr2b
RNA polymerase II subunit B.
   
  
 0.859
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.