STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
upf3bUPF3B regulator of nonsense mediated mRNA decay. (448 aa)    
Predicted Functional Partners:
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
 0.993
eif4a3
Eukaryotic translation initiation factor 4A3.
   
 0.988
casc3
CASC3 exon junction complex subunit.
    
 0.987
rbm8a
RNA binding motif protein 8A.
    
 0.986
UPF1
Regulator of nonsense transcripts 1.
    
 0.981
LOC114450420
Regulator of nonsense transcripts 1-like.
    
 0.981
LOC114453748
ranBP2-like and GRIP domain-containing protein 3.
   
 
  0.977
smg5
SMG5 nonsense mediated mRNA decay factor.
   
 0.974
magoh
Mago homolog, exon junction complex subunit.
    
 0.973
srrm1
Serine and arginine repetitive matrix 1.
    
 0.966
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.