STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114443412Mothers against decapentaplegic homolog 4-like. (524 aa)    
Predicted Functional Partners:
SMAD9
SMAD family member 9.
   
0.955
LOC114442472
Mothers against decapentaplegic homolog 5.
   
0.955
smad1
SMAD family member 1.
   
0.954
ski
SKI proto-oncogene.
    
 0.950
LOC114443438
Mothers against decapentaplegic homolog 2-like.
   
0.933
LOC114451915
Mothers against decapentaplegic homolog 3-like.
   
0.933
LOC114440808
Mothers against decapentaplegic homolog 2.
   
0.933
SMAD3
Mothers against decapentaplegic homolog 3.
   
0.933
lef1
Lymphoid enhancer binding factor 1.
    
 0.922
skil
SKI like proto-oncogene.
    
 0.916
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.