STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114443615Armadillo repeat protein deleted in velo-cardio-facial syndrome homolog. (688 aa)    
Predicted Functional Partners:
LOC114435954
Macrophage-stimulating protein receptor-like.
   
 0.858
met
MET proto-oncogene, receptor tyrosine kinase.
   
 0.858
mst1r
Macrophage stimulating 1 receptor.
   
 0.858
ctnna1
Catenin alpha 1.
   
 0.668
ctnna2
Catenin alpha 2.
   
 0.668
mtor
Mechanistic target of rapamycin kinase.
    
 0.664
smg1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase.
    
 0.664
afdn
Afadin, adherens junction formation factor.
     
 0.647
ctnnal1
Catenin alpha like 1.
   
 0.643
LOC114447211
Vinculin-like.
   
 0.643
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.