STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114437048Endoplasmic reticulum-Golgi intermediate compartment protein 2-like. (375 aa)    
Predicted Functional Partners:
ergic3
ERGIC and golgi 3.
   
0.999
gtpbp3
GTP binding protein 3, mitochondrial.
  
 0.992
trmu
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
  
 0.922
LOC114441077
Derlin-2-like.
   
 
 0.916
derl2
Derlin 2.
   
 
 0.916
sel1l
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
  
 
 0.913
ENSPRNP00000010538
annotation not available
  
 
 0.911
med17
Mediator complex subunit 17.
   
 
  0.759
ccdc47
Coiled-coil domain containing 47.
   
 
  0.754
copb1
Coatomer protein complex subunit beta 1.
   
   0.734
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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