STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab41RAB41, member RAS oncogene family. (211 aa)    
Predicted Functional Partners:
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.916
LOC114436367
Rab GDP dissociation inhibitor beta-like.
   
 0.898
LOC114438251
Rab GDP dissociation inhibitor alpha.
   
 0.898
LOC114431925
Rab GDP dissociation inhibitor beta-like.
   
 0.898
GCC2
GRIP and coiled-coil domain containing 2.
    
 0.896
vps52
VPS52 subunit of GARP complex.
    
 0.883
vps39
VPS39 subunit of HOPS complex.
    
 
 0.865
arl1
ADP ribosylation factor like GTPase 1.
   
 0.858
LOC114452359
Uncharacterized LOC114452359.
   
 0.857
vps53
VPS53 subunit of GARP complex.
    
 0.850
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.