STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbck1RANBP2-type and C3HC4-type zinc finger containing 1. (517 aa)    
Predicted Functional Partners:
sharpin
SHANK associated RH domain interactor.
   
0.992
rnf31
Ring finger protein 31.
   
 0.986
LOC114449730
E3 ubiquitin-protein ligase RNF31-like.
   
 0.986
tnfrsf1a
TNF receptor superfamily member 1A.
    
 0.971
LOC114452983
Uncharacterized LOC114452983.
    
 0.962
ripk1
Receptor interacting serine/threonine kinase 1.
    
 0.911
LOC114443749
TNF receptor-associated factor 2-like.
   
 0.882
LOC114441942
TNF receptor-associated factor 2-like.
   
 0.882
traf3
TNF receptor associated factor 3.
   
 0.881
LOC114439105
TNF receptor-associated factor 5-like.
   
 0.881
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.