STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114442010ATPase family AAA domain-containing protein 1-A-like. (389 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
   
 0.993
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
   
 0.886
ubxn1
UBX domain protein 1.
   
 0.871
ALDH18A1
Delta-1-pyrroline-5-carboxylate synthase-like.
    
 0.846
LOC114451763
Delta-1-pyrroline-5-carboxylate synthase-like.
    
 0.846
chmp3
Charged multivesicular body protein 3.
   
 0.845
yod1
YOD1 deubiquitinase.
    
 0.833
nploc4
NPL4 homolog, ubiquitin recognition factor.
   
 0.833
faap100
FA core complex associated protein 100.
   
 0.833
faf1
Fas associated factor 1.
   
 0.826
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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