STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114431910Runt-related transcription factor 1-like. (491 aa)    
Predicted Functional Partners:
mysm1
Myb like, SWIRM and MPN domains 1.
    
  0.979
cbfb
Core-binding factor subunit beta.
    
 0.973
spi1
Spi-1 proto-oncogene.
   
 0.914
LOC114439147
CCAAT/enhancer-binding protein beta-like.
    
 0.879
tbx21
T-box transcription factor 21.
   
 0.867
LOC114429195
Proto-oncogene c-Fos-like.
    
 0.867
mecom
MDS1 and EVI1 complex locus.
    
 0.855
cebpa
CCAAT enhancer binding protein alpha.
    
 0.851
gata3
GATA binding protein 3.
    
 0.841
fli1
Fli-1 proto-oncogene, ETS transcription factor.
   
 0.830
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.