STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114435991Keratin, type II cytoskeletal 8-like. (471 aa)    
Predicted Functional Partners:
bag3
BCL2 associated athanogene 3.
    
 0.970
bag2
BCL2 associated athanogene 2.
    
 0.799
rps27a
Ribosomal protein S27a.
    
  0.699
LOC114438014
Keratin, type II cytoskeletal 8-like.
  
0.682
cct5
Chaperonin containing TCP1 subunit 5.
    
  0.674
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
  0.651
ruvbl2
RuvB like AAA ATPase 2.
   
 
 0.650
cct7
Chaperonin containing TCP1 subunit 7.
   
  0.633
cct2
Chaperonin containing TCP1 subunit 2.
    
  0.625
cct6a
Chaperonin containing TCP1 subunit 6A.
    
  0.624
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.