UHRF2 protein (Parambassis ranga) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UHRF2

Ubiquitin like with PHD and ring finger domains 2. (920 aa)

Predicted Functional Partners:

dnmt1

0.968

usp7

0.889

lig1

0.837

pcna

0.814

usp40

0.752

LOC114438071

0.615

znf131

0.601

ENSPRNP00000010250

0.593

hgfac

0.590

HABP2

0.590

Your Current Organism:

Parambassis ranga

NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPRNP00000010250	HABP2	ENSPRNP00000010250	ENSPRNP00000028339	annotation not available	Hyaluronan binding protein 2.	0.450
ENSPRNP00000010250	LOC114438071	ENSPRNP00000010250	ENSPRNP00000001436	annotation not available	Uncharacterized LOC114438071.	0.944
ENSPRNP00000010250	UHRF2	ENSPRNP00000010250	ENSPRNP00000008566	annotation not available	Ubiquitin like with PHD and ring finger domains 2.	0.593
ENSPRNP00000010250	dnmt1	ENSPRNP00000010250	ENSPRNP00000022173	annotation not available	DNA methyltransferase 1.	0.960
ENSPRNP00000010250	hgfac	ENSPRNP00000010250	ENSPRNP00000025362	annotation not available	HGF activator.	0.450
HABP2	ENSPRNP00000010250	ENSPRNP00000028339	ENSPRNP00000010250	Hyaluronan binding protein 2.	annotation not available	0.450
HABP2	UHRF2	ENSPRNP00000028339	ENSPRNP00000008566	Hyaluronan binding protein 2.	Ubiquitin like with PHD and ring finger domains 2.	0.590
HABP2	hgfac	ENSPRNP00000028339	ENSPRNP00000025362	Hyaluronan binding protein 2.	HGF activator.	0.690
LOC114438071	ENSPRNP00000010250	ENSPRNP00000001436	ENSPRNP00000010250	Uncharacterized LOC114438071.	annotation not available	0.944
LOC114438071	UHRF2	ENSPRNP00000001436	ENSPRNP00000008566	Uncharacterized LOC114438071.	Ubiquitin like with PHD and ring finger domains 2.	0.615
LOC114438071	dnmt1	ENSPRNP00000001436	ENSPRNP00000022173	Uncharacterized LOC114438071.	DNA methyltransferase 1.	0.969
UHRF2	ENSPRNP00000010250	ENSPRNP00000008566	ENSPRNP00000010250	Ubiquitin like with PHD and ring finger domains 2.	annotation not available	0.593
UHRF2	HABP2	ENSPRNP00000008566	ENSPRNP00000028339	Ubiquitin like with PHD and ring finger domains 2.	Hyaluronan binding protein 2.	0.590
UHRF2	LOC114438071	ENSPRNP00000008566	ENSPRNP00000001436	Ubiquitin like with PHD and ring finger domains 2.	Uncharacterized LOC114438071.	0.615
UHRF2	dnmt1	ENSPRNP00000008566	ENSPRNP00000022173	Ubiquitin like with PHD and ring finger domains 2.	DNA methyltransferase 1.	0.968
UHRF2	hgfac	ENSPRNP00000008566	ENSPRNP00000025362	Ubiquitin like with PHD and ring finger domains 2.	HGF activator.	0.590
UHRF2	lig1	ENSPRNP00000008566	ENSPRNP00000048759	Ubiquitin like with PHD and ring finger domains 2.	DNA ligase 1.	0.837
UHRF2	pcna	ENSPRNP00000008566	ENSPRNP00000008784	Ubiquitin like with PHD and ring finger domains 2.	Proliferating cell nuclear antigen.	0.814
UHRF2	usp40	ENSPRNP00000008566	ENSPRNP00000006346	Ubiquitin like with PHD and ring finger domains 2.	Ubiquitin specific peptidase 40.	0.752
UHRF2	usp7	ENSPRNP00000008566	ENSPRNP00000015304	Ubiquitin like with PHD and ring finger domains 2.	Ubiquitin specific peptidase 7.	0.889