STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114437218Transcription factor COE3-like. (571 aa)    
Predicted Functional Partners:
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.724
yod1
YOD1 deubiquitinase.
    
   0.705
plaa
Phospholipase A2 activating protein.
    
   0.705
vcp
Valosin containing protein.
    
 0.545
ndufb7
Transitional endoplasmic reticulum ATPase-like.
    
 0.545
spata5l1
Spermatogenesis associated 5 like 1.
    
 0.538
SPATA5
Spermatogenesis associated 5.
    
 0.538
LOC114442728
Elongation factor 1-gamma.
    
   0.470
LOC114447758
acyl-CoA desaturase-like.
    
 
 0.465
LOC114452600
acyl-CoA desaturase-like.
    
 
 0.465
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.