STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYDE1Synapse defective Rho GTPase homolog 1. (970 aa)    
Predicted Functional Partners:
LOC114443585
Rho-related GTP-binding protein RhoF-like.
    
 0.710
LOC114435353
Cell division control protein 42 homolog.
    
 0.659
CDC42
Cell division control protein 42 homolog.
    
 0.659
LOC114439217
Rho-related GTP-binding protein RhoA-C-like.
    
 0.621
LOC114437949
Transforming protein RhoA.
    
 0.621
LOC114436382
Rho-related GTP-binding protein RhoA-B.
    
 0.621
LOC114435340
Rho-related GTP-binding protein RhoA-D.
    
 0.621
LOC114438945
Rho-related GTP-binding protein RhoA-D-like.
    
 0.621
RHOB
Ras homolog family member B.
    
 0.621
rhoq
Ras homolog family member Q.
    
 0.600
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.