STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPRNP00000008788annotation not available (889 aa)    
Predicted Functional Partners:
LOC114441808
E3 ubiquitin-protein ligase KCMF1-like.
    
 
 0.913
kcmf1
Potassium channel modulatory factor 1.
    
 
 0.913
huwe1
HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1.
   
 
 0.770
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.753
emc1
ER membrane protein complex subunit 1.
 
    
 0.664
uba5
Ubiquitin like modifier activating enzyme 5.
   
 
 0.656
atg7
Autophagy related 7.
   
 
 0.656
UBA3
NEDD8-activating enzyme E1 catalytic subunit.
   
 
 0.642
LOC114436039
NEDD8-activating enzyme E1 catalytic subunit-like.
   
 
 0.642
CALML6
Calmodulin-like protein 6.
    
 
 0.639
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.