STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114445851Krueppel-like factor 5. (444 aa)    
Predicted Functional Partners:
LOC114437792
Histone acetyltransferase p300-like.
    
 0.738
LOC114439147
CCAAT/enhancer-binding protein beta-like.
    
 0.723
cebpd
CCAAT enhancer binding protein delta.
    
 0.720
wwp1
WW domain containing E3 ubiquitin protein ligase 1.
    
 0.671
wwp2
WW domain containing E3 ubiquitin protein ligase 2.
    
 0.671
LOC114435034
Transcription factor AP-1-like.
   
 0.669
ENSPRNP00000010757
BRCA1 associated RING domain 1.
    
 0.669
ENSPRNP00000015862
JunE proto-oncogene, AP-1 transcription factor subunit.
   
 0.669
ENSPRNP00000027936
annotation not available
    
  0.657
ENSPRNP00000027937
annotation not available
    
  0.657
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.