STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114436248E3 ubiquitin-protein ligase TRIM62. (475 aa)    
Predicted Functional Partners:
CARD9
Caspase recruitment domain family member 9.
   
 
 0.830
dhx58
DExH-box helicase 58.
    
  0.581
ifih1
Interferon induced with helicase C domain 1.
    
  0.581
trim44
Tripartite motif containing 44.
    
 
 0.574
gmps
Guanine monophosphate synthase.
    
  0.543
ENSPRNP00000012519
annotation not available
      
 0.535
fau
FAU ubiquitin like and ribosomal protein S30 fusion.
    
 0.528
rps27a
Ribosomal protein S27a.
    
  0.526
pidd1
P53-induced death domain protein 1.
    
  0.522
trim32
Tripartite motif containing 32.
    
 0.516
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.