STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114441047Carnitine O-acetyltransferase-like. (629 aa)    
Predicted Functional Partners:
rpp14
Ribonuclease P/MRP subunit p14.
   
 0.888
scp2
Sterol carrier protein 2.
   
 0.856
LOC114434034
Non-specific lipid-transfer protein-like.
   
 0.856
cpt2
Carnitine palmitoyltransferase 2.
  
0.844
hsdl2
Hydroxysteroid dehydrogenase like 2.
   
 0.838
LOC114443372
Carnitine O-acetyltransferase-like.
  
  
 
0.836
acox1
acyl-CoA oxidase 1.
   
 0.796
LOC114428494
Glycerophosphocholine phosphodiesterase GPCPD1-like.
   
 
 0.769
pex14
Peroxisomal biogenesis factor 14.
    
 0.736
pex5
Peroxisomal biogenesis factor 5.
    
 0.731
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.