STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmed6Transmembrane p24 trafficking protein 6. (247 aa)    
Predicted Functional Partners:
tmed2
Transmembrane p24 trafficking protein 2.
   
 
 0.671
tmed10
Transmembrane p24 trafficking protein 10.
   
 
 0.667
nip7
Nucleolar pre-rRNA processing protein NIP7.
   
  
 0.583
cep76
Centrosomal protein 76.
      
 0.582
ostm1
Osteoclastogenesis associated transmembrane protein 1.
   
  
 0.545
LOC114442419
Transmembrane emp24 domain-containing protein 9-like.
   
 
 0.544
LOC114438903
Transmembrane emp24 domain-containing protein 4-like.
   
 
 0.544
ufm1
Ubiquitin fold modifier 1.
      
 0.539
trabd
TraB domain containing.
      
 0.538
wdyhv1
WDYHV motif containing 1.
      
 0.534
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.