STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnip1TNFAIP3 interacting protein 1. (658 aa)    
Predicted Functional Partners:
LOC114446809
Tumor necrosis factor alpha-induced protein 3-like.
   
 0.986
tnfrsf1a
TNF receptor superfamily member 1A.
    
 
 0.961
optn
Optineurin.
    
 0.893
ikbkg
Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.
    
 0.753
vcpip1
Valosin containing protein interacting protein 1.
    
 0.731
otud7b
OTU deubiquitinase 7B.
    
 0.731
LOC114451823
OTU domain-containing protein 7A-like.
    
 0.731
zranb1
Zinc finger RANBP2-type containing 1.
    
 0.731
LOC114447424
Ubiquitin thioesterase Zranb1-like.
    
 0.731
nfkb1
Nuclear factor kappa B subunit 1.
   
 
 0.714
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.