STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114436434Glutamate receptor U1-like. (460 aa)    
Predicted Functional Partners:
scn3b
Sodium voltage-gated channel beta subunit 3.
   
 
  0.746
LOC114433732
Glutamate receptor 2-like.
  
 
0.610
gria2
Glutamate ionotropic receptor AMPA type subunit 2.
  
 
0.607
LOC114441094
Glutamate receptor ionotropic, NMDA 1-like.
   
0.598
LOC114443563
Glutamate receptor ionotropic, NMDA 1.
   
0.598
scn4b
Sodium voltage-gated channel beta subunit 4.
     
 0.590
ENSPRNP00000051160
Leucine-rich repeats and guanylate kinase domain containing.
   
  0.575
LOC114437433
Sodium channel protein type 4 subunit alpha A-like.
     
 0.562
LOC114439501
Sodium channel protein type 4 subunit alpha B-like.
     
 0.562
GRIN2C
Glutamate receptor ionotropic, NMDA 2C-like.
    
0.558
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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