STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114441864PDZ and LIM domain protein 2-like. (366 aa)    
Predicted Functional Partners:
pdlim4
PDZ and LIM domain 4.
  
  
0.931
ehbp1l1
EH domain binding protein 1 like 1.
   
 0.888
ehbp1
EH domain binding protein 1.
   
 0.888
LOC114446907
LIM domain-binding protein 3-like.
    
 
0.877
LOC114443345
Smoothelin-like.
   
 
  0.812
SMTN
Smoothelin-like.
   
 
  0.812
git1
GIT ArfGAP 1.
    
 0.811
git2
GIT ArfGAP 2.
    
 0.811
LOC114443592
ARF GTPase-activating protein GIT2-like.
    
 0.811
LOC114432719
Protein-tyrosine kinase 2-beta-like.
    
 0.808
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.