retreg2 protein (Parambassis ranga) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

retreg2

Reticulophagy regulator family member 2. (572 aa)

Predicted Functional Partners:

eif6

0.972

gnl2

0.961

rsl24d1

0.955

nmd3

0.945

mrto4

0.938

gtpbp4

0.925

LOC114438164

0.920

pa2g4

0.920

znf593

0.918

gnl3

0.909

Your Current Organism:

Parambassis ranga

NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC114438164	eif6	ENSPRNP00000010819	ENSPRNP00000028226	Proliferation-associated protein 2G4-like.	Eukaryotic translation initiation factor 6.	0.992
LOC114438164	gnl2	ENSPRNP00000010819	ENSPRNP00000029004	Proliferation-associated protein 2G4-like.	G protein nucleolar 2.	0.997
LOC114438164	gnl3	ENSPRNP00000010819	ENSPRNP00000042915	Proliferation-associated protein 2G4-like.	G protein nucleolar 3.	0.990
LOC114438164	gtpbp4	ENSPRNP00000010819	ENSPRNP00000052187	Proliferation-associated protein 2G4-like.	GTP binding protein 4.	0.998
LOC114438164	mrto4	ENSPRNP00000010819	ENSPRNP00000044881	Proliferation-associated protein 2G4-like.	MRT4 homolog, ribosome maturation factor.	0.997
LOC114438164	nmd3	ENSPRNP00000010819	ENSPRNP00000003457	Proliferation-associated protein 2G4-like.	NMD3 ribosome export adaptor.	0.988
LOC114438164	retreg2	ENSPRNP00000010819	ENSPRNP00000009587	Proliferation-associated protein 2G4-like.	Reticulophagy regulator family member 2.	0.920
LOC114438164	rsl24d1	ENSPRNP00000010819	ENSPRNP00000045536	Proliferation-associated protein 2G4-like.	Ribosomal L24 domain containing 1.	0.996
LOC114438164	znf593	ENSPRNP00000010819	ENSPRNP00000020104	Proliferation-associated protein 2G4-like.	Zinc finger protein 593.	0.990
eif6	LOC114438164	ENSPRNP00000028226	ENSPRNP00000010819	Eukaryotic translation initiation factor 6.	Proliferation-associated protein 2G4-like.	0.992
eif6	gnl2	ENSPRNP00000028226	ENSPRNP00000029004	Eukaryotic translation initiation factor 6.	G protein nucleolar 2.	0.998
eif6	gnl3	ENSPRNP00000028226	ENSPRNP00000042915	Eukaryotic translation initiation factor 6.	G protein nucleolar 3.	0.992
eif6	gtpbp4	ENSPRNP00000028226	ENSPRNP00000052187	Eukaryotic translation initiation factor 6.	GTP binding protein 4.	0.999
eif6	mrto4	ENSPRNP00000028226	ENSPRNP00000044881	Eukaryotic translation initiation factor 6.	MRT4 homolog, ribosome maturation factor.	0.999
eif6	nmd3	ENSPRNP00000028226	ENSPRNP00000003457	Eukaryotic translation initiation factor 6.	NMD3 ribosome export adaptor.	0.986
eif6	pa2g4	ENSPRNP00000028226	ENSPRNP00000057026	Eukaryotic translation initiation factor 6.	Proliferation-associated 2G4.	0.992
eif6	retreg2	ENSPRNP00000028226	ENSPRNP00000009587	Eukaryotic translation initiation factor 6.	Reticulophagy regulator family member 2.	0.972
eif6	rsl24d1	ENSPRNP00000028226	ENSPRNP00000045536	Eukaryotic translation initiation factor 6.	Ribosomal L24 domain containing 1.	0.999
eif6	znf593	ENSPRNP00000028226	ENSPRNP00000020104	Eukaryotic translation initiation factor 6.	Zinc finger protein 593.	0.998
gnl2	LOC114438164	ENSPRNP00000029004	ENSPRNP00000010819	G protein nucleolar 2.	Proliferation-associated protein 2G4-like.	0.997