STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bace1Beta-secretase 1. (530 aa)    
Predicted Functional Partners:
APP
Amyloid beta precursor protein.
    
 0.833
LOC114453804
Amyloid-beta A4 protein-like.
    
 0.833
LOC114447741
ADP-ribosylation factor-binding protein GGA1-like.
    
 0.767
LOC114440521
ADP-ribosylation factor-binding protein GGA1-like.
    
 0.767
LOC114441960
ADP-ribosylation factor-binding protein GGA1-like.
    
 0.767
rtn1
Reticulon 1.
   
 0.750
ctso
Cathepsin O.
   
 0.746
LOC114442957
Cathepsin F-like.
   
 0.746
LOC114444347
Reticulon-2-like.
   
 0.733
LOC114450664
reticulon-3-B-like.
   
 0.715
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.