STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemk1HemK methyltransferase family member 1. (353 aa)    
Predicted Functional Partners:
LOC114442737
Multifunctional methyltransferase subunit TRM112-like protein.
    
 0.991
mtrf1
Mitochondrial translation release factor 1.
  
 
 0.922
LOC114436198
Nicotinamide phosphoribosyltransferase-like.
  
 
 0.916
nampt
Nicotinamide phosphoribosyltransferase.
  
 
 0.916
c9h12orf65
Chromosome 9 C12orf65 homolog.
  
 
 0.916
mtrf1l
Mitochondrial translational release factor 1 like.
  
 
 0.916
fbxo5
F-box protein 5.
  
 
 0.916
cpox
Coproporphyrinogen oxidase.
  
 
 0.893
fech
Ferrochelatase.
    
 0.887
etf1
Eukaryotic translation termination factor 1.
   
 0.860
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.