creb3l1 protein (Parambassis ranga) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

creb3l1

cAMP responsive element binding protein 3 like 1. (498 aa)

Predicted Functional Partners:

LOC114449900-2

0.912

LOC114442001

0.900

atf6b

0.898

atf6

0.898

LOC114449900

0.891

LOC114426503

0.891

LOC114435038

0.887

LOC114450017

0.887

LOC114432586

0.882

LOC114437792

0.882

Your Current Organism:

Parambassis ranga

NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC114426503	LOC114432586	ENSPRNP00000023997	ENSPRNP00000016247	Cyclic AMP-responsive element-binding protein 1-like.	CREB-binding protein-like.	0.952
LOC114426503	LOC114435038	ENSPRNP00000023997	ENSPRNP00000010309	Cyclic AMP-responsive element-binding protein 1-like.	Cyclic AMP-responsive element-binding protein 3-like protein 3-A.	0.813
LOC114426503	LOC114437792	ENSPRNP00000023997	ENSPRNP00000016857	Cyclic AMP-responsive element-binding protein 1-like.	Histone acetyltransferase p300-like.	0.942
LOC114426503	LOC114442001	ENSPRNP00000023997	ENSPRNP00000033732	Cyclic AMP-responsive element-binding protein 1-like.	Cyclic AMP-responsive element-binding protein 3-like protein 3.	0.889
LOC114426503	LOC114450017	ENSPRNP00000023997	ENSPRNP00000055404	Cyclic AMP-responsive element-binding protein 1-like.	Cyclic AMP-responsive element-binding protein 3-like protein 3-A.	0.813
LOC114426503	atf6	ENSPRNP00000023997	ENSPRNP00000002273	Cyclic AMP-responsive element-binding protein 1-like.	Activating transcription factor 6.	0.597
LOC114426503	atf6b	ENSPRNP00000023997	ENSPRNP00000000488	Cyclic AMP-responsive element-binding protein 1-like.	Activating transcription factor 6 beta.	0.733
LOC114426503	creb3l1	ENSPRNP00000023997	ENSPRNP00000009616	Cyclic AMP-responsive element-binding protein 1-like.	cAMP responsive element binding protein 3 like 1.	0.891
LOC114432586	LOC114426503	ENSPRNP00000016247	ENSPRNP00000023997	CREB-binding protein-like.	Cyclic AMP-responsive element-binding protein 1-like.	0.952
LOC114432586	LOC114435038	ENSPRNP00000016247	ENSPRNP00000010309	CREB-binding protein-like.	Cyclic AMP-responsive element-binding protein 3-like protein 3-A.	0.866
LOC114432586	LOC114437792	ENSPRNP00000016247	ENSPRNP00000016857	CREB-binding protein-like.	Histone acetyltransferase p300-like.	0.994
LOC114432586	LOC114442001	ENSPRNP00000016247	ENSPRNP00000033732	CREB-binding protein-like.	Cyclic AMP-responsive element-binding protein 3-like protein 3.	0.869
LOC114432586	LOC114449900	ENSPRNP00000016247	ENSPRNP00000016217	CREB-binding protein-like.	cAMP-responsive element modulator-like.	0.952
LOC114432586	LOC114449900-2	ENSPRNP00000016247	ENSPRNP00000016225	CREB-binding protein-like.	cAMP-responsive element modulator-like.	0.879
LOC114432586	LOC114450017	ENSPRNP00000016247	ENSPRNP00000055404	CREB-binding protein-like.	Cyclic AMP-responsive element-binding protein 3-like protein 3-A.	0.866
LOC114432586	creb3l1	ENSPRNP00000016247	ENSPRNP00000009616	CREB-binding protein-like.	cAMP responsive element binding protein 3 like 1.	0.882
LOC114435038	LOC114426503	ENSPRNP00000010309	ENSPRNP00000023997	Cyclic AMP-responsive element-binding protein 3-like protein 3-A.	Cyclic AMP-responsive element-binding protein 1-like.	0.813
LOC114435038	LOC114432586	ENSPRNP00000010309	ENSPRNP00000016247	Cyclic AMP-responsive element-binding protein 3-like protein 3-A.	CREB-binding protein-like.	0.866
LOC114435038	LOC114437792	ENSPRNP00000010309	ENSPRNP00000016857	Cyclic AMP-responsive element-binding protein 3-like protein 3-A.	Histone acetyltransferase p300-like.	0.866
LOC114435038	LOC114442001	ENSPRNP00000010309	ENSPRNP00000033732	Cyclic AMP-responsive element-binding protein 3-like protein 3-A.	Cyclic AMP-responsive element-binding protein 3-like protein 3.	0.879