STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114433628AFG3-like protein 1. (678 aa)    
Predicted Functional Partners:
phb
Prohibitin.
  
 0.947
PHB2
Prohibitin 2.
  
 0.926
spg7
SPG7 matrix AAA peptidase subunit, paraplegin.
  
 
0.916
NDUFA13
NADH:ubiquinone oxidoreductase subunit A13.
   
 
 0.911
timmdc1
Translocase of inner mitochondrial membrane domain containing 1.
    
   0.910
mrps11
Mitochondrial ribosomal protein S11.
 
 
 0.887
mrpl2
Mitochondrial ribosomal protein L2.
  
 
 0.884
mrpl19
Mitochondrial ribosomal protein L19.
  
 
 0.869
mrpl27
Mitochondrial ribosomal protein L27.
  
 
 0.867
mrpl13
Mitochondrial ribosomal protein L13.
  
 
 0.866
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.