STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UPF2UPF2 regulator of nonsense mediated mRNA decay. (1276 aa)    
Predicted Functional Partners:
rbm8a
RNA binding motif protein 8A.
    
 0.998
upf3b
UPF3B regulator of nonsense mediated mRNA decay.
   
 0.993
upf3a
UPF3A regulator of nonsense mediated mRNA decay.
   
 0.992
UPF1
Regulator of nonsense transcripts 1.
   
 0.992
LOC114450420
Regulator of nonsense transcripts 1-like.
   
 0.992
casc3
CASC3 exon junction complex subunit.
    
 0.986
smg1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase.
   
 
 0.983
LOC114437303
RNA-binding protein with serine-rich domain 1-like.
    
 0.982
rnps1
RNA binding protein with serine rich domain 1.
    
 0.982
srrm1
Serine and arginine repetitive matrix 1.
    
 0.977
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.