STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nit1Nitrilase 1. (318 aa)    
Predicted Functional Partners:
taf8
TATA-box binding protein associated factor 8.
    
  0.926
taf11
TATA-box binding protein associated factor 11.
     
 0.924
sord
Sorbitol dehydrogenase.
  
 0.880
hlcs
Holocarboxylase synthetase.
    
 0.854
nudt12
Nudix hydrolase 12.
    
 0.852
nadsyn1
NAD synthetase 1.
    
 0.849
taf6
TATA-box binding protein associated factor 6.
     
 0.838
taf6l
TATA-box binding protein associated factor 6 like.
     
 0.838
QPRT
Quinolinate phosphoribosyltransferase.
  
 
 0.837
suclg1
succinate-CoA ligase alpha subunit.
  
 0.831
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.