STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cacna1eCalcium voltage-gated channel subunit alpha1 E. (1863 aa)    
Predicted Functional Partners:
UNC79
Unc-79 homolog, NALCN channel complex subunit.
   
 0.997
LOC114439792
Voltage-dependent calcium channel gamma-1 subunit-like.
   
 0.929
cacng1
Calcium voltage-gated channel auxiliary subunit gamma 1.
   
 0.929
cacnb1
Calcium voltage-gated channel auxiliary subunit beta 1.
   
 0.908
cacna1g
Calcium voltage-gated channel subunit alpha1 G.
   
0.900
cacng4
Calcium voltage-gated channel auxiliary subunit gamma 4.
   
 
 0.869
LOC114439791
Voltage-dependent calcium channel gamma-4 subunit-like.
     
 0.867
cacnb4
Calcium voltage-gated channel auxiliary subunit beta 4.
   
 0.853
LOC114438122
Voltage-dependent L-type calcium channel subunit beta-3-like.
   
 0.853
LOC114448542
Voltage-dependent L-type calcium channel subunit beta-4-like.
   
 0.853
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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