STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atf7ipActivating transcription factor 7 interacting protein. (876 aa)    
Predicted Functional Partners:
LOC114431995
Histone-lysine N-methyltransferase SETDB2-like.
   
 0.975
setdb1
SET domain bifurcated histone lysine methyltransferase 1.
   
 0.975
arl14ep
ADP ribosylation factor like GTPase 14 effector protein.
    
 
 0.950
C1QC
Complement C1q subcomponent subunit C-like.
   
 0.768
LOC114427690
Small ubiquitin-related modifier 3.
    
 0.723
LOC114433646
Small ubiquitin-related modifier 2.
    
 0.723
LOC114426739
Small ubiquitin-related modifier 3.
    
 0.723
sumo2
Small ubiquitin like modifier 2.
    
 0.723
sp1
Sp1 transcription factor.
   
  0.711
smg1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase.
   
 0.643
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.