STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
top3bDNA topoisomerase III beta. (858 aa)    
Predicted Functional Partners:
tdrd3
Tudor domain containing 3.
    
 0.996
rmi1
RecQ mediated genome instability 1.
    
 0.990
blm
BLM RecQ like helicase.
  
 0.988
recql5
RecQ like helicase 5.
  
 0.981
ercc4
ERCC excision repair 4, endonuclease catalytic subunit.
    
 0.978
rpa3
Replication protein A3.
    
 0.976
mus81
MUS81 structure-specific endonuclease subunit.
    
 0.975
rmi2
RecQ mediated genome instability 2.
    
 0.967
dhx58
DExH-box helicase 58.
   
 0.965
ifih1
Interferon induced with helicase C domain 1.
   
 0.965
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.