STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RELProto-oncogene c-Rel-like. (630 aa)    
Predicted Functional Partners:
nfkb1
Nuclear factor kappa B subunit 1.
   
0.967
nfkbia
NFKB inhibitor alpha.
   
 0.960
LOC114429119
NF-kappa-B inhibitor alpha-like.
   
 0.960
nfkbie
NFKB inhibitor epsilon.
   
 0.936
kpna4
Karyopherin subunit alpha 4.
    
  0.926
rps3
Ribosomal protein S3.
    
 0.909
LOC114445348
Transcription factor RelB homolog.
  
  
0.903
kpna1
Karyopherin subunit alpha 1.
    
 0.892
sirt1
Sirtuin 1.
    
 0.891
LOC114437792
Histone acetyltransferase p300-like.
    
 0.891
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.