STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mbd4methyl-CpG binding domain 4, DNA glycosylase. (419 aa)    
Predicted Functional Partners:
mta1
Metastasis associated 1.
   
 0.867
mta2
Metastasis associated 1 family member 2.
   
 0.867
mta3
Metastasis associated 1 family member 3.
   
 0.867
mcrs1
Microspherule protein 1.
    
 0.828
ENSPRNP00000034425
annotation not available
    
 0.790
ENSPRNP00000010246
Histone deacetylase 8.
    
 0.788
LOC114428135
Probable histone deacetylase 1-B.
    
 0.788
HDAC1
Probable histone deacetylase 1-B.
    
 0.788
HDAC2
Histone deacetylase 2.
    
 0.788
hdac3
Histone deacetylase 3.
    
 0.788
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.