STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114449006Probable assembly chaperone of rpl4. (416 aa)    
Predicted Functional Partners:
grwd1
Glutamate rich WD repeat containing 1.
   
 
 0.986
pgk1
Phosphoglycerate kinase 1.
  
 0.983
rpl4
Ribosomal protein L4.
  
 
 0.977
cstf3
Cleavage stimulation factor subunit 3.
  
 0.967
tpi1
Triosephosphate isomerase 1.
  
 0.954
LOC114449828
Triosephosphate isomerase.
  
 0.954
cdc27
Cell division cycle 27.
   
  0.931
cdc23
Cell division cycle 23.
  
 
 0.930
cdc16
Cell division cycle 16.
    
  0.926
LOC114451780
Glucose-6-phosphate isomerase-like.
  
 0.925
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.