STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114435032Vesicle-trafficking protein SEC22b-B. (215 aa)    
Predicted Functional Partners:
LOC114442936
Syntaxin-5-like.
   
 0.994
gosr2
Golgi SNAP receptor complex member 2.
    
 0.992
bet1
Bet1 golgi vesicular membrane trafficking protein.
   
 0.988
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
   
 0.985
ykt6
YKT6 v-SNARE homolog.
    
 0.981
stx18
Syntaxin 18.
   
 0.980
use1
Unconventional SNARE in the ER 1.
    
 0.973
gosr1
Golgi SNAP receptor complex member 1.
    
 0.972
vti1b
Vesicle transport through interaction with t-SNAREs 1B.
   
 0.968
stx8
Syntaxin 8.
    
 0.967
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.