STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114431537Sorting nexin-27-like. (563 aa)    
Predicted Functional Partners:
vps26a
VPS26, retromer complex component A.
   
 0.988
ankfy1
Ankyrin repeat and FYVE domain containing 1.
    
 0.946
vps35
VPS35 retromer complex component.
    
 0.946
LOC114444806
Vacuolar protein sorting-associated protein 26B-like.
   
 0.945
LOC114446237
Vacuolar protein sorting-associated protein 26B-like.
   
 0.945
vps29
VPS29 retromer complex component.
    
 0.935
LOC114452983
Uncharacterized LOC114452983.
    
 
 0.934
washc3
WASH complex subunit 3.
    
 0.909
washc5
WASH complex subunit 5.
    
 0.909
washc1
WASH complex subunit 1.
    
 0.903
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.