STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yif1bYip1 interacting factor homolog B, membrane trafficking protein. (305 aa)    
Predicted Functional Partners:
yipf5
Yip1 domain family member 5.
   
 
 0.847
rabac1
Rab acceptor 1.
   
 
 0.845
selenos
Selenoprotein S.
   
 
 0.840
yipf4
Yip1 domain family member 4.
   
 
 0.819
maea
Macrophage erythroblast attacher.
   
 
 0.754
yipf1
Yip1 domain family member 1.
   
  
 0.624
LOC114431217
Protein YIPF1-like.
   
  
 0.548
LOC114431307
Protein YIPF1-like.
   
  
 0.548
RAB1A
Ras-related protein ORAB-1.
   
 
 0.528
LOC114446841
Ras-related protein ORAB-1-like.
   
 
 0.528
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.