STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trps1Transcriptional repressor GATA binding 1. (1540 aa)    
Predicted Functional Partners:
ENSPRNP00000027756
Translocase of outer mitochondrial membrane 20.
   
 0.882
arid4a
AT-rich interaction domain 4A.
   
 0.880
nfyb
Nuclear transcription factor Y subunit beta.
    
 
 0.745
LOC114442208
Serum response factor-like.
    
 0.729
srf
Serum response factor.
    
 0.729
parvb
Parvin beta.
   
 0.693
hdac9
Histone deacetylase 9.
   
 0.693
LOC114435620
Histone deacetylase 7-like.
   
 0.693
hdac4
Histone deacetylase 4.
   
 0.693
HDAC4
Histone deacetylase 4-like.
   
 0.693
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.