STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114445370mRNA decay activator protein ZFP36-like. (423 aa)    
Predicted Functional Partners:
cnot1
CCR4-NOT transcription complex subunit 1.
    
 0.917
exosc8
Exosome component 8.
    
  0.878
xrn1
5'-3' exoribonuclease 1.
    
 0.842
dcp2
Decapping mRNA 2.
   
 0.784
mapkapk2
MAPK activated protein kinase 2.
    
 0.784
cnot8
CCR4-NOT transcription complex subunit 8.
    
 0.722
LOC114442473
CCR4-NOT transcription complex subunit 7.
    
 0.722
cnot10
CCR4-NOT transcription complex subunit 10.
    
 0.714
dicer1
Dicer 1, ribonuclease III.
    
 0.705
cnot11
CCR4-NOT transcription complex subunit 11.
    
 0.703
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.