STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114440748Clustered mitochondria protein homolog. (1387 aa)    
Predicted Functional Partners:
TOMM7
Translocase of outer mitochondrial membrane 7.
     
 0.563
eif3b
Eukaryotic translation initiation factor 3 subunit B.
   
 
 0.554
LOC114452509
Eukaryotic translation initiation factor 3 subunit C.
   
 
 0.541
gfm1
G elongation factor mitochondrial 1.
   
 
 0.533
eif3g
Eukaryotic translation initiation factor 3 subunit G.
    
 
 0.473
mybbp1a
MYB binding protein 1a.
   
    0.465
LOC114450131
Selenoprotein Pb-like.
   
 
 0.449
eif3a
Eukaryotic translation initiation factor 3 subunit A.
   
 
 0.449
prkn
Parkin RBR E3 ubiquitin protein ligase.
    
 
 0.445
g3bp1
G3BP stress granule assembly factor 1.
   
 
 0.439
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.