STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pus7Pseudouridine synthase 7. (659 aa)    
Predicted Functional Partners:
nop58
NOP58 ribonucleoprotein.
   
 
 0.977
nop56
NOP56 ribonucleoprotein.
   
 
 0.977
nhp2
NHP2 ribonucleoprotein.
  
 0.973
snu13
Small nuclear ribonucleoprotein 13.
  
 0.952
LOC114427013
H/ACA ribonucleoprotein complex subunit DKC1-like.
   
 
 0.946
ENSPRNP00000035700
annotation not available
   
 
 0.946
noc3l
NOC3 like DNA replication regulator.
   
   0.943
rrp9
Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.
   
 
  0.941
gar1
GAR1 ribonucleoprotein.
   
 0.939
mphosph10
M-phase phosphoprotein 10.
   
 
  0.936
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.