STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114425991Sodium-driven chloride bicarbonate exchanger-like. (1016 aa)    
Predicted Functional Partners:
LOC114443585
Rho-related GTP-binding protein RhoF-like.
    
  0.608
syk
Spleen associated tyrosine kinase.
    
  0.559
LOC114434405
Tyrosine-protein kinase ZAP-70.
    
  0.559
LOC114437872
Protein FAM169B-like.
    
  0.552
uaca
Uveal autoantigen with coiled-coil domains and ankyrin repeats.
    
  0.550
SLC26A9
Solute carrier family 26 member 9.
     
 0.549
lsm8
LSM8 homolog, U6 small nuclear RNA associated.
     
 0.542
LOC114438628
Solute carrier family 26 member 10-like.
     
 0.537
LOC114431374
Cytochrome b5 domain-containing protein 1.
   
  
 0.537
vcp
Valosin containing protein.
    
  0.536
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.