STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubxn1UBX domain protein 1. (307 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
   
 0.999
faf1
Fas associated factor 1.
   
 0.998
faf2
Fas associated factor family member 2.
   
 0.998
derl1
Derlin 1.
    
 0.994
vcp
Valosin containing protein.
   
 0.987
ndufb7
Transitional endoplasmic reticulum ATPase-like.
   
 0.987
ngly1
N-glycanase 1.
    
 0.984
psmc1
Proteasome 26S subunit, ATPase 1.
   
 
 0.983
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.972
spata5l1
Spermatogenesis associated 5 like 1.
   
 0.969
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.