STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114442475pre-mRNA-processing factor 39-like. (727 aa)    
Predicted Functional Partners:
sf3b1
Splicing factor 3b subunit 1.
   
 0.994
snrpc
Small nuclear ribonucleoprotein polypeptide C.
   
 0.993
luc7l3
LUC7 like 3 pre-mRNA splicing factor.
   
 0.987
snrpd1
Small nuclear ribonucleoprotein D1 polypeptide.
    
 0.986
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
    
 0.985
snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.983
ncbp2
Nuclear cap binding protein subunit 2.
    
 0.979
snrpd3
Small nuclear ribonucleoprotein D3 polypeptide.
   
 0.979
sf3a2
Splicing factor 3a subunit 2.
    
 0.977
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.976
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.