STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lonp2Lon peptidase 2, peroxisomal. (861 aa)    
Predicted Functional Partners:
grpel1
GrpE like 1, mitochondrial.
  
  
 0.917
CLPB
ClpB homolog, mitochondrial AAA ATPase chaperonin.
  
 
 0.870
ENSPRNP00000013859
annotation not available
  
 
 0.870
tysnd1
Trypsin domain containing 1.
  
 0.866
clpx
Caseinolytic mitochondrial matrix peptidase chaperone subunit.
  
 
 0.859
ncdn
Neurochondrin.
     
 0.842
samm50
SAMM50 sorting and assembly machinery component.
  
 
 0.829
LOC114452018
Sorting and assembly machinery component 50 homolog A.
  
 
 0.829
pex5
Peroxisomal biogenesis factor 5.
   
 0.781
LOC114449229
PEX5-related protein-like.
   
 0.781
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.