STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dus4lDihydrouridine synthase 4 like. (320 aa)    
Predicted Functional Partners:
eprs1
glutamyl-prolyl-tRNA synthetase 1.
  
 
 0.823
psmb1
Proteasome 20S subunit beta 1.
   
 
  0.817
trmt11
tRNA methyltransferase 11 homolog.
  
  
 0.707
mettl1
Methyltransferase like 1.
  
 
 0.638
pus3
Pseudouridine synthase 3.
  
 
 0.632
ttc4
prolyl-tRNA synthetase 2, mitochondrial.
  
 
 0.614
pus1
Pseudouridine synthase 1.
  
 
 0.612
trmt61a
tRNA methyltransferase 61A.
   
  
 0.610
wdr6
WD repeat domain 6.
   
 
 0.609
tsr3
TSR3 ribosome maturation factor.
   
  
 0.598
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.