STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114428101Teashirt homolog 1-like. (1121 aa)    
Predicted Functional Partners:
LOC114448436
Iroquois-class homeodomain protein irx-1-like.
    
 0.662
LOC114431692
Iroquois-class homeodomain protein irx-1-A-like.
    
 0.662
meis2
Meis homeobox 2.
    
 0.662
LOC114447002
Homeobox protein Meis1.
    
 0.662
LOC114448869
Iroquois-class homeodomain protein irx-4-A-like.
    
 0.657
irx2
Iroquois homeobox 2.
    
 0.657
LOC114451379
Iroquois-class homeodomain protein IRX-5-like.
    
 0.657
irx6
Iroquois homeobox 6.
    
 0.657
irx5
Iroquois homeobox 5.
    
 0.657
irx3
Iroquois homeobox 3.
    
 0.657
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.