STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sf3b4Splicing factor 3b subunit 4. (395 aa)    
Predicted Functional Partners:
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
    
 0.999
sf3a1
Splicing factor 3a subunit 1.
   
 0.999
rbmx2
RNA binding motif protein X-linked 2.
    
0.999
sf3b3
Splicing factor 3b subunit 3.
   
 0.999
sf3a3
Splicing factor 3a subunit 3.
    
 0.999
sf3b2
Splicing factor 3b subunit 2.
   
 0.999
prpf8
pre-mRNA processing factor 8.
    
 0.999
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 0.999
phf5a
PHD finger protein 5A.
    
 0.999
sf3a2
Splicing factor 3a subunit 2.
   
 0.999
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.