STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx54DEAD-box helicase 54. (858 aa)    
Predicted Functional Partners:
cep152
Centrosomal protein 152.
   
 0.998
pes1
Pescadillo ribosomal biogenesis factor 1.
   
 0.998
noc2l
NOC2 like nucleolar associated transcriptional repressor.
   
 0.997
ftsj3
FtsJ RNA 2'-O-methyltransferase 3.
  
 0.997
nifk
Nucleolar protein interacting with the FHA domain of MKI67.
   
 0.996
ddx18
DEAD-box helicase 18.
  
0.996
gtpbp4
GTP binding protein 4.
   
 0.995
ddx27
DEAD-box helicase 27.
  
0.994
ddx55
DEAD-box helicase 55.
  
0.994
rrp1b
Ribosomal RNA processing 1B.
   
 0.994
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.